FastQCFastQC Report
Wed 8 May 2024
EGAF00007962243

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962243
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446174
Total Bases13.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8720.19543944739047994No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7650.1714577720799509No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6630.14859673580262409No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5640.12640808294521869No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5060.11340867016007207No Hit
ATGAACCCGTCCACCCACGTTTCTAGCAACG4950.11094326428702703No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4910.1100467530604652No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)