FastQCFastQC Report
Wed 8 May 2024
EGAF00007962244

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962244
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420471
Total Bases18.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5120.12176820755771503No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5020.11938992225385342No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4810.11439552311574401No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4420.10512021043068367No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)