FastQCFastQC Report
Wed 8 May 2024
EGAF00007962245

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962245
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420471
Total Bases13 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36400.8656958506056304No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6920.1645773430272242No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6360.15125894532559914No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4960.11796295107153645No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4630.1101146095687931No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4430.10535803896106985No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)