FastQCFastQC Report
Wed 8 May 2024
EGAF00007962246

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962246
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469730
Total Bases20.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13300.2831413790901156No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG10830.230557980116237No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8470.18031635194686307No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG6640.14135780129010284No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5990.1275200647180295No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5430.11559832244055096No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5260.11197922210631639No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5230.11134055734145147No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)