FastQCFastQC Report
Wed 8 May 2024
EGAF00007962247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469730
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13300.2831413790901156No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC12360.263129883124348No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9400.2001149596576757No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8720.18563855832073745No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA7240.15413109658740126No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6330.13475826538649863No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6260.1332680476018138No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5920.12602984693334468No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5800.123475187873885No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5550.11815298150001065No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)