FastQCFastQC Report
Wed 8 May 2024
EGAF00007962248

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962248
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442587
Total Bases19.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13010.2939535051865509No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG10920.24673115116350006No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7200.16267987988802202No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG6310.1425708391796415No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5980.13511467801810717No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5190.11726508008594921No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4930.11139052886777064No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4790.10822730898105909No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)