FastQCFastQC Report
Wed 8 May 2024
EGAF00007962249

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962249
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442587
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41440.9363130864666156No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12700.28694923258026106No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC11800.2666142475942583No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7210.16290582416564428No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6660.15047888889642036No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6090.13760006507195197No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5570.1258509626355948No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5430.12268774274888326No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5300.119750467139794No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4950.11184241742301514No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)