FastQCFastQC Report
Wed 8 May 2024
EGAF00007962250

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962250
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473675
Total Bases20.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13770.2907056526099119No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG11700.2470048028711669No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8500.17944793370982215No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG6450.13616931440333563No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6140.12962474270333035No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5310.11210217976460654No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5220.11020214281944371No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)