FastQCFastQC Report
Wed 8 May 2024
EGAF00007962251

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962251
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473675
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13980.2951390721486251No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC13140.27740539399377206No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9040.19084815538079905No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8850.18683696627434423No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA7030.14841399693882937No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6440.13595819918720642No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6330.1336359318097852No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5670.11970232754525782No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5620.11864675146461182No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)