FastQCFastQC Report
Wed 8 May 2024
EGAF00007962252

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962252
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448149
Total Bases19.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12920.288296972658647No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG10460.23340451501621112No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7730.17248727543741033No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG5810.12964438166770426No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5710.12741298095053208No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5150.11491713693436781No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5140.11469399686265058No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5020.11201631600204395No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)