FastQCFastQC Report
Wed 8 May 2024
EGAF00007962253

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962253
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448149
Total Bases13.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38010.8481554125971495No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12870.2871812723000609No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC11410.25460282182934696No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8040.1794046176606441No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6430.14347906611417185No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5870.13098322209800758No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5710.12741298095053208No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5470.12205761922931882No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5300.1182642380101261No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5250.11714853765153999No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)