FastQCFastQC Report
Wed 8 May 2024
EGAF00007962263

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962263
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460290
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT49741.0806230854461318No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT17660.3836711638314976No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT15350.3334854113710921No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG14110.30654587325381827No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13460.292424341176215No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC13340.28981728910034976No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA11930.2591844272089335No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC11430.24832171022616178No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11170.24267309739512047No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11140.2420213343761542No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9920.21551630493819113No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8860.1924873449347151No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8800.19118381889678246No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8680.18857676682091726No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT7880.17119641964848248No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7050.15316430945708143No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7030.15272980077777054No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6500.1412153207760325No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6020.13078711247257166No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6010.1305698581329162No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6000.13035260379326077No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA5770.12535575398118579No Hit
ATGGAACCTGTGCAGCAGCGCCCGGTAATGT5730.12448673662256403No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5730.12448673662256403No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5580.12122792152773251No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5460.11862086945186731No Hit
ATGGAACCGGTCCAGCAGCGTCCGGTTATGT5190.11275500228117057No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5140.1116687305828934No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4870.10580286341219666No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)