FastQCFastQC Report
Wed 8 May 2024
EGAF00007962264

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962264
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436117
Total Bases19.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19910.4565288672535122No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18840.43199416670297186No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT18230.41800709442649564No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT14970.3432565114407372No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT13770.3157409594214397No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12580.2884547036689695No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT11360.26048055911601703No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG10920.25039152337560794No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9690.22218808255582792No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG8930.20476156627693945No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG8700.1994877521399074No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG8000.18343701346198382No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7900.18114405079370902No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7650.17541164412302204No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT7260.1664690897167503No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5610.12863520569021616No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5550.12725942808925128No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5380.12336139155318412No Hit
CACGCTAGACTGCTCGGACGGACCTGGACGTTCTGGGGTAGACT5340.12244420648587422No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5300.12152702141856428No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5140.11785828114932462No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5130.11762898488249714No Hit
AACGCTAGACTGTTCGCTCGGACCAGGACGTTCTGGAGTGGACT5080.11648250354835973No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4970.11396024461325745No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4960.11373094834642998No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG4870.11166728194498265No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4820.11052080061084527No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4510.1034126163391934No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4380.10043176487043615No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4380.10043176487043615No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)