FastQCFastQC Report
Wed 8 May 2024
EGAF00007962265

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962265
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436117
Total Bases13.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45601.0455909767333078No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41700.9561654326705906No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT16680.38246617306823627No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT15280.3503646957123891No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13680.31367729301999236No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12490.28639103726752224No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC12250.28088792686366276No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA11440.2623149292506369No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10610.24328333910395605No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC10470.24007319136837135No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10340.2370923398996141No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9390.2153091945510035No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8180.18756434626487847No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7970.1827491246615014No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT6970.15981949797875342No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6460.14812538837055195No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6170.14147579663255502No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6050.13872424143062526No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6010.13780705636331536No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5650.1295523907575261No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5470.12542505795463144No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5470.12542505795463144No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA5400.12381998408683909No Hit
ATGGAACCTGTGCAGCAGCGCCCGGTAATGT5300.12152702141856428No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5200.11923405875028949No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5160.11831687368297956No Hit
ATGGAACCGGTCCAGCAGCGTCCGGTTATGT5010.11487742968056738No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4990.11441883714691241No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4490.10295402380553842No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4430.10157824620457355No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)