FastQCFastQC Report
Wed 8 May 2024
EGAF00007962267

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962267
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465531
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46280.9941335807926862No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT18020.38708485578833635No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT16670.35808571287411584No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG15170.3258644429694263No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13390.28762853601586147No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC13180.2831175582292049No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA12040.2586293931016409No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC11590.24896301213023406No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11550.24810377826610902No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11450.24595569360579642No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10040.21566769989538828No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9660.20750497818620028No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8950.19225357709798058No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8710.18709817391323028No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT7430.15960269026122856No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6980.1499363092898217No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6900.14821784156157164No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6410.13769222672603973No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6320.13575895053175835No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6240.13404048280350825No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6000.12888507961875795No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5660.12158159177369499No Hit
ATGGAACCTGTGCAGCAGCGCCCGGTAATGT5500.11814465631719477No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA5460.11728542245306973No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5430.11664099705497592No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5420.11642618858894466No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5330.11449291239466329No Hit
ATGGAACCGGTCCAGCAGCGTCCGGTTATGT5020.10783384994769414No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4910.10547095682135026No Hit
ACTGCTTCTTTCCTGGCAAACGGTGGCGACG4680.1005303621026312No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)