FastQCFastQC Report
Wed 8 May 2024
EGAF00007962269

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962269
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442952
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46351.0463887735014177No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39130.8833914284166231No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT16640.375661471220358No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT15100.34089472448482No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13680.30883707489750584No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12980.293034008199534No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA11840.26729758529140857No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC11780.2659430367172967No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11200.2528490671675486No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC10510.23727175856526214No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10150.22914446712059094No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9830.22192020805866097No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8930.20160197944698297No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7980.1801549603568784No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT7800.1760913146345428No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6340.14313063266448736No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5980.13500334121981616No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5910.13342303455001897No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5900.13319727645433366No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5890.13297151835864834No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5580.12597301739240369No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5560.12552150120103306No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5500.12416695262692119No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA5410.12213512976575339No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5200.11739420975636188No Hit
ATGGAACCTGTGCAGCAGCGCCCGGTAATGT5170.11671693546930592No Hit
ATGGAACCGGTCCAGCAGCGTCCGGTTATGT4940.11152449926854378No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4800.10836388592894942No Hit
ATGGAATCTTTCGAAGGCCAGGGCGACTCCC4490.10136538496270475No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)