FastQCFastQC Report
Wed 8 May 2024
EGAF00007962270

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962270
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445520
Total Bases19.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16840.37798527563296824No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15860.35598850781109714No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13540.303914526845035No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13330.29920093374034834No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12600.28281558628119946No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT12490.28034656132160174No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12160.2729394864428084No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10880.24420901418567065No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG9310.2089692943077752No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8890.1995421080984019No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG7980.17911653797809302No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7520.16879152451068413No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7310.1640779314059975No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7170.16093553600287303No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6800.15263063386604417No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6780.1521817202370264No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6750.15150834979349972No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT6710.1506105225354642No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5900.1324295205602442No Hit
GATTACCGCCGCGTTATCACCCGGTGCGAAGGCAGAGGACAGAG5630.12636918656850424No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5510.12367570479439756No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG5440.12210450709283532No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG4860.1090860118513198No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4590.1030256778595798No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)