FastQCFastQC Report
Wed 8 May 2024
EGAF00007962271

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962271
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445520
Total Bases13.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA36050.8091668163045429No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30260.6792063207038966No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17730.3979619321242593No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16660.37394505297180824No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15010.3369096785778416No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14740.33084934458610166No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13560.3043634404740528No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC12480.28012210450709285No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA10320.23163943257317293No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9030.2026845035015263No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8730.19595079906625962No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8060.18091219249416413No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7250.16273119051894416No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6840.15352846112407972No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT6840.15352846112407972No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6320.1418567067696175No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6320.1418567067696175No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5940.13332734781827976No Hit
TTCACGATCCGTTACAACACCCTGGATCGCA5920.13287843418926198No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4870.1093104686658287No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG4700.10549470281917758No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC4670.10482133237565093No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)