FastQCFastQC Report
Wed 8 May 2024
EGAF00007962272

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962272
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422357
Total Bases18.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16110.38143087482864024No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15560.36840871584938806No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13270.31418918119032No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT12740.30164055526485883No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12520.296431691673158No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11580.27417563814498164No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10870.2573652147354016No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10840.25665491515471506No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG9140.21640460558248115No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8120.19225441983914082No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG7410.17544399642956077No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7030.166446868407532No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6980.16526303577305454No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6840.16194830439651764No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT6550.1550820751165483No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6490.15366147595517538No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6450.15271440984759338No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5890.13945548434144575No Hit
GATTACCGCCGCGTTATCACCCGGTGCGAAGGCAGAGGACAGAG5880.13921871781455025No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5670.1342466207497449No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5540.1311686559001035No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG4430.10488757141470367No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG4320.10228313961885324No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG4260.10086254045748029No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)