FastQCFastQC Report
Wed 8 May 2024
EGAF00007962273

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962273
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422357
Total Bases13 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39480.9347542481834089No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA34410.8147136190473936No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28160.66673453973771No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16550.39184860201204197No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15480.3665145836342241No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13440.3182142121475434No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13310.315136247297902No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13030.3085067845448282No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC12450.29477432598488956No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA9690.2294267645617333No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7950.18822938888191743No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7860.186098490139858No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6940.16431596966547257No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT6580.1557923746972348No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6460.15295117637448888No Hit
TTCACGATCCGTTACAACACCCTGGATCGCA6320.14963644499795195No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6100.14442758140625112No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5960.14111285002971422No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5550.13140542242699896No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC4540.10749200321055412No Hit

[OK]Adapter Content

Adapter graph