FastQCFastQC Report
Wed 8 May 2024
EGAF00007962274

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962274
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450166
Total Bases19.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17740.3940768516502801No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15770.3503152170532648No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14830.32943403100189705No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13300.295446568599139No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT13220.29366944638200126No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12940.2874495186220194No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11360.2523513548335503No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10200.22658308268505398No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG9660.21458750771937463No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8580.19059635778801598No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG8240.18304358836518084No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7850.17438011755663468No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7680.1706037328452171No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA7070.1570531759395423No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7030.15616461483097346No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT7030.15616461483097346No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6600.14661258291385842No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6370.14150335653958762No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6200.13772697182817006No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6050.13439486767103692No Hit
GATTACCGCCGCGTTATCACCCGGTGCGAAGGCAGAGGACAGAG5880.13061848295961934No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4960.11018157746253605No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG4890.10862659552254059No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG4590.10196238720827427No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)