FastQCFastQC Report
Wed 8 May 2024
EGAF00007962275

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962275
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450166
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA36780.8170319393290475No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29140.6473167675923992No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18170.4036288835673952No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16970.37697205031033No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16040.3563130045361045No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14750.3276569087847594No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13460.29900081303341436No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC13250.2943358672134279No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA10740.23857865765073327No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9030.2005926702594154No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8560.19015207723373154No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8360.18570927169088736No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7100.15771959677096892No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT7040.15638675510811567No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6980.15505391344526243No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6690.14861184540813835No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6360.1412812162624454No Hit
TTCACGATCCGTTACAACACCCTGGATCGCA6240.1386155329367389No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5710.12684209824820178No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5100.11329154134252699No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC4780.10618305247397626No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG4680.10396164970255417No Hit

[OK]Adapter Content

Adapter graph