FastQCFastQC Report
Wed 8 May 2024
EGAF00007962276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427477
Total Bases18.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17000.3976822144817148No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15570.36423012232237056No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13270.31042605801013856No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12940.3027063444349053No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT12740.2980277301468851No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11840.2769739658507943No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11650.27252928227717516No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11040.2582595086987136No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG9250.21638591082093306No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8260.19322677009523317No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG7470.1747462436575535No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7410.17334265937114746No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6930.16211398507989905No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6730.15743537079187886No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6540.1529906872182597No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT6250.14620669650063045No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6220.1455049043574274No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5990.1401244979262042No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5820.13614767578138706No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5780.13521195292378305No Hit
GATTACCGCCGCGTTATCACCCGGTGCGAAGGCAGAGGACAGAG5390.1260886550621437No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG4890.11439211934209324No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)