FastQCFastQC Report
Wed 8 May 2024
EGAF00007962277

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962277
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427477
Total Bases13.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37390.8746669411453715No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA35660.8341969275539971No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29580.6919670531981837No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16930.39604469948090776No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15590.36469798375117257No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14120.3303101687342243No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13170.30808675086612847No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13060.3055135130077174No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC12480.2919455315724589No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA10020.23439857582981072No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8050.188314225092812No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7800.1824659572327868No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6620.15486213293346776No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6610.15462820221906676No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6300.14737635007263547No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT6210.1452709736430264No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6200.1450370429286254No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6060.14176201292701127No Hit
TTCACGATCCGTTACAACACCCTGGATCGCA5760.134744091494981No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC4410.10316344505084485No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4390.10269558362204281No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)