FastQCFastQC Report
Wed 8 May 2024
EGAF00007962279

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962279
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433720
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28140.6488056810845707No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10360.23886378308586184No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG10280.23701927510836485No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8590.19805404408374067No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8350.19252052015124965No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6290.14502443973070184No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6130.14133542377570782No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5830.13441851886009407No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5820.13418795536290695No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5460.12588766946417043No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5380.12404316148667344No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5270.12150696301761504No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4690.10813428018076178No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)