FastQCFastQC Report
Wed 8 May 2024
EGAF00007962281

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962281
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410122
Total Bases12.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39670.9672731528667079No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25460.620790886614227No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG10140.24724350315272042No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9740.23749030776208055No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7940.1936009285042012No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5870.14312814235763993No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5450.13288728719746806No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5280.12874217915644612No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5210.12703536996308418No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4960.12093962284393425No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4930.12020813318963626No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4640.11313706653142237No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4530.1104549377989964No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)