FastQCFastQC Report
Wed 8 May 2024
EGAF00007962283

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962283
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439713
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26480.6022109876214713No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10780.2451599111238467No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG10740.24425022685251518No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9420.21423064589857474No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8140.18512074921596586No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6510.14805111515920613No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6200.1410010620563868No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5880.13372358788573457No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5750.1307671140039071No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5570.1266735347829152No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5430.12348963983325487No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5400.12280737662975622No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)