FastQCFastQC Report
Wed 8 May 2024
EGAF00007962285

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962285
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417128
Total Bases12.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38840.9311290539115091No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26390.6326595193801423No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10050.24093323871809133No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG9540.22870677585777027No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7680.18411614660248174No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6450.15462879499817803No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5430.1301758692775359No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5350.12825799275042674No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5250.12586064709154024No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5190.12442223969620836No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4920.11794940641721487No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4860.11651099902188297No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4640.1112368385723327No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)