FastQCFastQC Report
Wed 8 May 2024
EGAF00007962286

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962286
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442160
Total Bases19.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21480.4857969965623304No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13580.3071286412158495No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6720.15198118328206983No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5880.13298353537181112No Hit
ACCTGCACCAACTACGACCGGTTCCTTCAGCGGAGTGTGCAGTT5100.11534286231228515No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4730.10697485073276641No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4540.102677763705446No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)