FastQCFastQC Report
Wed 8 May 2024
EGAF00007962287

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962287
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442160
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21440.4848923466618419No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14160.3202460647729329No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8730.1974398407816175No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7450.16849104396598516No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5980.1352451601230324No Hit
GTGCAGGACGCCACCGTTGGCGCAGAAAAAG5250.11873529943911705No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4780.10810566310837708No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4680.10584403835715579No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4480.10132078885471323No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)