FastQCFastQC Report
Wed 8 May 2024
EGAF00007962289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962289
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416884
Total Bases12.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38950.934312662515232No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19150.4593603976166032No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12360.29648535323975017No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7320.17558841308373552No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5370.12881281123765842No Hit
GTGCAGGACGCCACCGTTGGCGCAGAAAAAG4510.10818357144913213No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4250.10194682453632187No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)