FastQCFastQC Report
Wed 8 May 2024
EGAF00007962291

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962291
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445797
Total Bases13.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20510.4600748771301736No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13780.3091093031133005No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9180.2059233238447096No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8190.18371590656733894No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5910.13257155162551565No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4830.1083452782320204No Hit
GTGCAGGACGCCACCGTTGGCGCAGAAAAAG4630.10385893130729906No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4490.10071848845999412No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)