FastQCFastQC Report
Wed 8 May 2024
EGAF00007962293

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962293
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421595
Total Bases13 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37360.8861585170602118No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18710.44379084192174956No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12640.29981380234585325No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6750.1601062631198188No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6060.1437398451120151No Hit
GTGCAGGACGCCACCGTTGGCGCAGAAAAAG4670.11076981463252647No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4450.1055515364271398No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4450.1055515364271398No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)