FastQCFastQC Report
Wed 8 May 2024
EGAF00007962295

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962295
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467129
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28780.6161039027763209No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14880.31854155918386573No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12800.2740142444592393No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10280.2200676900813266No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG9630.20615290422988083No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8960.19180997112146753No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8700.18624405678088923No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6820.14599821462593846No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC6310.13508045957326562No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG5940.12715973531936575No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5740.12287826274969013No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCG5210.11153236044004974No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5160.11046199229763085No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5090.10896347689824439No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4940.10575237247098766No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4860.10403978344311743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)