FastQCFastQC Report
Wed 8 May 2024
EGAF00007962297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962297
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441497
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41930.9497233276783307No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26330.5963800433525029No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13960.31619693905054846No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11780.2668194800870674No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8840.20022786111796909No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG8800.19932185269662084No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8530.19320629585251994No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6560.14858538110111735No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5590.12661467688342162No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC5480.12412315372471387No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG5400.12231113688201732No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCG5200.11778109477527593No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4920.111439035825838No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC4710.10668249161375956No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4680.10600298529774835No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4510.10215244950701817No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4490.10169944529634402No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)