FastQCFastQC Report
Wed 8 May 2024
EGAF00007962299

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962299
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471837
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28260.5989356493873944No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15330.3249003363449666No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12580.2666174971441409No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG10370.21977928818638642No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9580.20303621801596736No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9130.19349902614674136No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8570.18163052070948232No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6790.14390562842676602No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC6750.14305787803839037No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6190.13118937260113134No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5820.1233476815086566No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5580.1182611791784027No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5240.11105530087720972No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCG5080.10766429932370712No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4860.10300167218764107No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4750.10067035861960805No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)