FastQCFastQC Report
Wed 31 May 2023
EGAF00007962301

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962301
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445902
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39880.8943669236738117No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26530.5949737834770868No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14810.3321357607725464No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12090.27113581011074184No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9320.20901453682647758No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG9090.2038564527631632No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7940.17806603244659142No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6440.14442635377280208No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC5780.1296248951563348No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG5760.12917636610735092No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5300.11886019798072221No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5240.11751461083377064No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCG5050.11325358486842402No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4850.10876829437858543No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4690.10518006198671458No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4670.10473153293773071No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4650.10428300388874685No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4610.10338594579077914No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4540.10181609411933565No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)