FastQCFastQC Report
Wed 8 May 2024
EGAF00007962303

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962303
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476851
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15510.3252588334720909No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10580.2218722410144888No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9780.20509551201528362No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9210.19314209260334989No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9060.18999645591599892No Hit
CGTGCATCCGTCACTTCTCGCGGCTACCCGC8520.1786721638415354No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC8390.17594594537916455No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8220.17238089046683344No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7960.16692845354209176No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7540.15812067081750902No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6780.1421827782682641No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5900.12372837636913836No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5640.11827593944439668No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5220.10946815671981396No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5140.10779048381989342No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG4840.10149921044519147No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)