FastQCFastQC Report
Wed 8 May 2024
EGAF00007962304

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962304
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482699
Total Bases21.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11840.245287435855471No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10800.22374191784113906No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG9010.18665876664339473No Hit
ACGAACGTTAACAGCACGTGGGCGGTTCGGGTCACGGCGCAGAT8330.17257131255710081No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7830.16221289043482584No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7610.15765518470102485No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG7590.15724084781613387No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7310.15144013142765989No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6850.14191038307516693No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5770.11953619129105301No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5150.10669174785943207No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4970.10296271589541309No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)