FastQCFastQC Report
Wed 8 May 2024
EGAF00007962305

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962305
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482699
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16210.33582004520415415No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11370.23555051906053254No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10240.21214048506419114No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9230.19121647237719575No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8760.18147955558225726No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC8470.1754716707513378No Hit
CGTGCATCCGTCACTTCTCGCGGCTACCCGC8430.1746429969815558No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8350.1729856494419918No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7560.15661934248879736No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7500.15537633183412436No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6290.13030895029821896No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6190.128237265873764No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5380.11145662203567855No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5180.10731325318676856No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5080.10524156876231357No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5060.10482723187742259No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)