FastQCFastQC Report
Wed 8 May 2024
EGAF00007962307

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962307
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458530
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41220.8989597191023488No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15620.34065382853902687No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10390.22659367980284822No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8880.19366235578915228No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8150.17774191437855755No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC7740.16880029660000437No Hit
CGTGCATCCGTCACTTCTCGCGGCTACCCGC7540.16443853182997842No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7420.16182147296796284No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7220.1574597081979369No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7060.15397029638191612No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6350.138486031448324No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6060.13216147253178634No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5000.10904411925064882No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4940.10773558981964104No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG4920.10729941334263844No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4830.10533661919612675No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)