FastQCFastQC Report
Wed 8 May 2024
EGAF00007962308

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962308
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486022
Total Bases21.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12000.246902403594899No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10490.21583385114254086No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10250.2108958030706429No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8370.17221442650744204No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7910.16274983436963758No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6330.1302410178963092No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6070.12489146581841976No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5480.11275209764167055No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5350.11007732160272579No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5350.11007732160272579No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5040.10369900950985757No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4890.10061272946492134No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)