FastQCFastQC Report
Wed 8 May 2024
EGAF00007962309

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962309
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486022
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA24680.5077959433935089No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11810.24299311553797978No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11650.2397010834900478No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10670.21953738719646437No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10130.2084267790346939No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9740.2004024509178597No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7040.1448494101090074No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6660.13703083399516894No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6420.13209278592327098No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5570.11460386566863227No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5070.10431626551884482No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5000.10287600149787457No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)