FastQCFastQC Report
Wed 8 May 2024
EGAF00007962310

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962310
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461747
Total Bases20.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12400.2685453289355426No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9650.20898890517967633No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9170.19859360212410695No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8280.17931897770857202No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7280.15766209634280243No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5670.12279451734391345No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5630.12192824208928266No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5300.11478147123857871No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4760.10308675530106313No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)