FastQCFastQC Report
Wed 8 May 2024
EGAF00007962311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461747
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45570.9869040838381191No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23570.5104526937911887No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11070.2397416767190691No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10980.23779255739614985No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9660.20920547399333403No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9630.20855576755236094No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6030.13059099463559048No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6010.1301578570082751No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5830.12625961836243657No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4850.1050358746239824No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4810.10416959936935162No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4730.10243704886009006No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)