FastQCFastQC Report
Wed 8 May 2024
EGAF00007962312

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962312
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491599
Total Bases21.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13050.26546026334471795No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10590.21541947807054126No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10560.21480922459158786No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9150.18612731108077926No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8040.1635479323595044No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6180.12571221666439517No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6000.12205069579067493No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5560.1131003114326921No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5400.10984562621160743No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5330.10842170142738289No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4990.10150549533257797No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)