FastQCFastQC Report
Wed 8 May 2024
EGAF00007962313

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962313
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491599
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA26100.5309205266894359No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12480.25386544724460386No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12070.24552531636557437No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10970.22314935547061732No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10710.21786049198635477No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9790.19914605196511792No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6760.1375104505908271No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6700.13628994363292032No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5760.11716866795904793No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5730.11655841448009455No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5290.10760803012211172No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)