FastQCFastQC Report
Wed 8 May 2024
EGAF00007962314

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962314
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468055
Total Bases20.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12270.2621486791082245No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9760.20852250269733258No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9510.20318125006676566No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8510.181816239544498No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7230.15446902607599533No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5830.1245580113448206No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5590.11943040881947635No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5230.11173900503145998No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5150.11002980418967857No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5120.10938885387401054No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5020.10725235282178376No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)