FastQCFastQC Report
Wed 8 May 2024
EGAF00007962315

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962315
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468055
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42350.9048081956180364No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24060.5140421531657604No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11370.24292016963818355No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11260.24057001848073412No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9850.21044535364433667No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9320.1991218980675348No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6260.1337449658693957No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6210.1326767153432823No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6070.12968561387016483No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5420.11579835703069083No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5010.10703870271656107No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)