FastQCFastQC Report
Wed 8 May 2024
EGAF00007962325

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962325
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459044
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9070.19758454527234862No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6830.14878748006727024No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6160.13419192931396554No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5620.12242835109488415No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5460.11894284643737855No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5440.11850715835519036No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC5270.11480380965659066No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)